LIMS2

LIMS2
Available structures
PDB	Ortholog search: PDBe RCSB
List of PDB id codes
	3IXE
Identifiers
Aliases	LIMS2, PINCH-2, PINCH2, LGMD2W, LIM zinc finger domain containing 2, MDRCMTT
External IDs	OMIM: 607908 MGI: 2385067 HomoloGene: 41214 GeneCards: LIMS2
Gene location (Human)
Chr.	Chromosome 2 (human)
End	127,681,786 bp
Gene location (Mouse)
Chr.	Chromosome 18 (mouse)
End	32,091,672 bp
RNA expression pattern
	Top expressed in
	right coronary artery; ; popliteal artery; ; ascending aorta; ; left coronary artery; ; right lung; ; tibial nerve; ; gastric mucosa; ; left uterine tube; ; left ventricle; ; sural nerve;
	Top expressed in
	interventricular septum; ; ascending aorta; ; right lung lobe; ; sciatic nerve; ; left lobe of liver; ; belly cord; ; spermatocyte; ; aortic valve; ; myocardium of ventricle; ; brown adipose tissue;
	More reference expression data
	n/a
Gene ontology
Molecular function	protein binding; metal ion binding;
Cellular component	cytosol; cell junction; plasma membrane; membrane; nucleus; focal adhesion; cytoplasm; cell-cell junction;
Biological process	positive regulation of integrin-mediated signaling pathway; negative regulation of neural precursor cell proliferation; cell-cell junction organization; negative regulation of apoptotic process; negative regulation of hepatocyte proliferation; cell junction assembly; negative regulation of epithelial cell proliferation; cell-cell adhesion; positive regulation of substrate adhesion-dependent cell spreading;
	Sources:Amigo / QuickGO
Orthologs
	55679
	225341
	ENSG00000072163
	ENSMUSG00000024395
	Q7Z4I7
	Q91XD2
	NM_001136037; NM_001161403; NM_001161404; NM_001256542; NM_017980
	NM_144862; NM_001365015; NM_001379137; NM_001379138
	NP_001129509; NP_001154875; NP_001154876; NP_001243471; NP_060450
	NP_659111; NP_001351944; NP_001366066; NP_001366067
	Wikidata
View/Edit Human	View/Edit Mouse

LIM zinc finger domain containing 2 is a protein that in humans is encoded by the LIMS2 gene. ^[5]

Function

This gene encodes a member of a small family of focal adhesion proteins which interacts with ILK (integrin-linked kinase), a protein which effects protein-protein interactions with the extraceullar matrix. The encoded protein has five LIM domains, each domain forming two zinc fingers, which permit interactions which regulate cell shape and migration. A pseudogene of this gene is located on chromosome 4. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Nov 2011].

References

1 2 3 GRCh38: Ensembl release 89: ENSG00000072163 - Ensembl, May 2017
1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000024395 - Ensembl, May 2017
↑ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
↑ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
↑ "Entrez Gene: LIM zinc finger domain containing 2". Retrieved 2017-11-06.

Zhang Y, Chen K, Guo L, Wu C (2002). "Characterization of PINCH-2, a new focal adhesion protein that regulates the PINCH-1-ILK interaction, cell spreading, and migration". J. Biol. Chem. 277 (41): 38328–38. doi:10.1074/jbc.M205576200. PMID 12167643.
Kim SK, Jang HR, Kim JH, Noh SM, Song KS, Kim MR, Kim SY, Yeom YI, Kim NS, Yoo HS, Kim YS (2006). "The epigenetic silencing of LIMS2 in gastric cancer and its inhibitory effect on cell migration". Biochem. Biophys. Res. Commun. 349 (3): 1032–40. doi:10.1016/j.bbrc.2006.08.128. PMID 16959213.
Davila S, Froeling FE, Tan A, Bonnard C, Boland GJ, Snippe H, Hibberd ML, Seielstad M (2010). "New genetic associations detected in a host response study to hepatitis B vaccine". Genes Immun. 11 (3): 232–8. doi:10.1038/gene.2010.1. PMID 20237496.
Yuan Y, Dong HP, Nymoen DA, Nesland JM, Wu C, Davidson B (2011). "PINCH-2 expression in cancers involving serosal effusions using quantitative PCR". Cytopathology. 22 (1): 22–9. doi:10.1111/j.1365-2303.2010.00757.x. PMC 3225403. PMID 20500520.
Park CH, Rha SY, Ahn JB, Shin SJ, Kwon WS, Kim TS, An S, Kim NK, Yang WI, Chung HC (2015). "PINCH-2 presents functional copy number variation and suppresses migration of colon cancer cells by paracrine activity". Int. J. Cancer. 136 (10): 2273–83. doi:10.1002/ijc.29273. PMID 25346044. S2CID 2850271.
Chardon JW, Smith AC, Woulfe J, Pena E, Rakhra K, Dennie C, Beaulieu C, Huang L, Schwartzentruber J, Hawkins C, Harms MB, Dojeiji S, Zhang M, Majewski J, Bulman DE, Boycott KM, Dyment DA (2015). "LIMS2 mutations are associated with a novel muscular dystrophy, severe cardiomyopathy and triangular tongues". Clin. Genet. 88 (6): 558–64. doi:10.1111/cge.12561. PMID 25589244. S2CID 23714774.

This article incorporates text from the United States National Library of Medicine, which is in the public domain.

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[refGRCh38Ensembl-1] 1 2 3 GRCh38: Ensembl release 89: ENSG00000072163 - Ensembl, May 2017

[refGRCm38Ensembl-2] 1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000024395 - Ensembl, May 2017

[3] "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.

[4] "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.

[entrez-5] "Entrez Gene: LIM zinc finger domain containing 2". Retrieved 2017-11-06.

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Function

References

Further reading