PDLIM4

PDLIM4
Available structures
PDB	Ortholog search: PDBe RCSB
List of PDB id codes
	2EEG, 2V1W, 4Q2O
Identifiers
Aliases	PDLIM4, RIL, PDZ and LIM domain 4
External IDs	OMIM: 603422 MGI: 1353470 HomoloGene: 2735 GeneCards: PDLIM4
Gene location (Human)
Chr.	Chromosome 5 (human)
End	132,273,454 bp
Gene location (Mouse)
Chr.	Chromosome 11 (mouse)
End	53,959,840 bp
RNA expression pattern
	Top expressed in
	left uterine tube; ; tibial nerve; ; gastric mucosa; ; skin of abdomen; ; ascending aorta; ; minor salivary gland; ; pancreatic ductal cell; ; stromal cell of endometrium; ; canal of the cervix; ; myometrium;
	Top expressed in
	lip; ; condyle; ; uterus; ; epithelium of stomach; ; calvaria; ; ankle joint; ; molar; ; cervix; ; optic nerve; ; foot;
	More reference expression data
	; ; ; ;
	More reference expression data
Gene ontology
Molecular function	metal ion binding; protein binding; protein phosphatase binding; protein homodimerization activity; alpha-actinin binding; actin binding; muscle alpha-actinin binding;
Cellular component	stress fiber; early endosome lumen; filamentous actin; recycling endosome lumen; postsynaptic membrane; nucleus; cytoplasm; endosome; cytoskeleton; membrane; lamellipodium; cell junction; early endosome membrane; cell projection; neuron projection; dendritic spine; synapse; perinuclear region of cytoplasm; recycling endosome membrane; Z disc;
Biological process	actin cytoskeleton reorganization; excitatory chemical synaptic transmission; heart development; actin cytoskeleton organization; muscle structure development;
	Sources:Amigo / QuickGO
Orthologs
	8572
	30794
	ENSG00000131435
	ENSMUSG00000020388
	P50479
	P70271
	NM_003687; NM_001131027
	NM_019417
	NP_001124499; NP_003678
	NP_062290
	Wikidata
View/Edit Human	View/Edit Mouse

PDZ and LIM domain protein 4 is a protein that in humans is encoded by the PDLIM4 gene.^[5]^[6]

References

1 2 3 GRCh38: Ensembl release 89: ENSG00000131435 - Ensembl, May 2017
1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000020388 - Ensembl, May 2017
↑ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
↑ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
↑ Bashirova AA, Markelov ML, Shlykova TV, Levshenkova EV, Alibaeva RA, Frolova EI (Jun 1998). "The human RIL gene: mapping to human chromosome 5q31.1, genomic organization and alternative transcripts". Gene. 210 (2): 239–45. doi:10.1016/S0378-1119(98)00080-8. PMID 9573374.
↑ "Entrez Gene: PDLIM4 PDZ and LIM domain 4".

Maruyama K, Sugano S (1994). "Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides". Gene. 138 (1–2): 171–4. doi:10.1016/0378-1119(94)90802-8. PMID 8125298.
Suzuki Y, Yoshitomo-Nakagawa K, Maruyama K, et al. (1997). "Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library". Gene. 200 (1–2): 149–56. doi:10.1016/S0378-1119(97)00411-3. PMID 9373149.
Cuppen E, van Ham M, Wansink DG, et al. (2000). "The zyxin-related protein TRIP6 interacts with PDZ motifs in the adaptor protein RIL and the protein tyrosine phosphatase PTP-BL". Eur. J. Cell Biol. 79 (4): 283–93. doi:10.1078/S0171-9335(04)70031-X. PMID 10826496.
Walma T, Spronk CA, Tessari M, et al. (2002). "Structure, dynamics and binding characteristics of the second PDZ domain of PTP-BL". J. Mol. Biol. 316 (5): 1101–10. doi:10.1006/jmbi.2002.5402. PMID 11884147.
Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
Omasu F, Ezura Y, Kajita M, et al. (2003). "Association of genetic variation of the RIL gene, encoding a PDZ-LIM domain protein and localized in 5q31.1, with low bone mineral density in adult Japanese women". J. Hum. Genet. 48 (7): 342–5. doi:10.1007/s10038-003-0035-1. PMID 12908099.
Vallenius T, Scharm B, Vesikansa A, et al. (2004). "The PDZ-LIM protein RIL modulates actin stress fiber turnover and enhances the association of alpha-actinin with F-actin". Exp. Cell Res. 293 (1): 117–28. doi:10.1016/j.yexcr.2003.09.004. PMID 14729062.
Lehner B, Sanderson CM (2004). "A protein interaction framework for human mRNA degradation". Genome Res. 14 (7): 1315–23. doi:10.1101/gr.2122004. PMC 442147. PMID 15231747.
Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC 528928. PMID 15489334.
van den Berk LC, van Ham MA, te Lindert MM, et al. (2005). "The interaction of PTP-BL PDZ domains with RIL: an enigmatic role for the RIL LIM domain". Mol. Biol. Rep. 31 (4): 203–15. doi:10.1007/s11033-005-1407-8. PMID 15663004. S2CID 21554968.
Rual JF, Venkatesan K, Hao T, et al. (2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173–8. Bibcode:2005Natur.437.1173R. doi:10.1038/nature04209. PMID 16189514. S2CID 4427026.
Schwartz LM, Woloshin S, Birkmeyer JD (2005). "How do elderly patients decide where to go for major surgery? Telephone interview survey". BMJ. 331 (7520): 821. doi:10.1136/bmj.38614.449016.DE. PMC 1246083. PMID 16192286.
Boumber YA, Kondo Y, Chen X, et al. (2007). "RIL, a LIM gene on 5q31, is silenced by methylation in cancer and sensitizes cancer cells to apoptosis". Cancer Res. 67 (5): 1997–2005. doi:10.1158/0008-5472.CAN-06-3093. PMID 17332327.

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[refGRCh38Ensembl-1] 1 2 3 GRCh38: Ensembl release 89: ENSG00000131435 - Ensembl, May 2017

[refGRCm38Ensembl-2] 1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000020388 - Ensembl, May 2017

[3] "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.

[4] "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.

[pmid9573374-5] Bashirova AA, Markelov ML, Shlykova TV, Levshenkova EV, Alibaeva RA, Frolova EI (Jun 1998). "The human RIL gene: mapping to human chromosome 5q31.1, genomic organization and alternative transcripts". Gene. 210 (2): 239–45. doi:10.1016/S0378-1119(98)00080-8. PMID 9573374.

[entrez-6] "Entrez Gene: PDLIM4 PDZ and LIM domain 4".

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References

Further reading