ZGPAT

ZGPAT
Available structures
PDB	Ortholog search: PDBe RCSB
List of PDB id codes
	4II1
Identifiers
Aliases	ZGPAT, GPATC6, GPATCH6, KIAA1847, ZC3H9, ZC3HDC9, ZIP, zinc finger CCCH-type and G-patch domain containing
External IDs	MGI: 2449939 HomoloGene: 41874 GeneCards: ZGPAT
Gene location (Human)
Chr.	Chromosome 20 (human)
End	63,736,142 bp
Gene location (Mouse)
Chr.	Chromosome 2 (mouse)
End	181,025,421 bp
RNA expression pattern
	Top expressed in
	right lobe of liver; ; blood; ; sural nerve; ; spleen; ; monocyte; ; kidney; ; bone marrow; ; right adrenal gland; ; lymph node; ; appendix;
	Top expressed in
	bronchus; ; hypothalamus; ; cerebellar cortex; ; olfactory bulb; ; mesencephalon; ; superior frontal gyrus; ; lens; ; neural tube; ; adrenal gland; ; proximal tubule;
	More reference expression data
	; ;
	More reference expression data
Gene ontology
Molecular function	DNA-binding transcription factor activity; RNA polymerase II cis-regulatory region sequence-specific DNA binding; sequence-specific DNA binding; DNA binding; DNA-binding transcription repressor activity, RNA polymerase II-specific; protein binding; metal ion binding; nucleic acid binding; DNA-binding transcription factor activity, RNA polymerase II-specific;
Cellular component	nucleus; plasma membrane;
Biological process	negative regulation of epidermal growth factor-activated receptor activity; negative regulation of transcription, DNA-templated; regulation of transcription, DNA-templated; negative regulation of transcription by RNA polymerase II; transcription, DNA-templated;
	Sources:Amigo / QuickGO
Orthologs
	84619
	229007
	ENSG00000197114
	ENSMUSG00000027582
	Q8N5A5
	Q8VDM1
NM_181485; NM_001083113; NM_001195653; NM_001195654; NM_032527;
	NM_181484
	NM_001048148; NM_144894
	NP_001076582; NP_001182582; NP_001182583; NP_115916; NP_852150
	NP_001041613; NP_659143
	Wikidata
View/Edit Human	View/Edit Mouse

Zinc finger CCCH-type with G patch domain-containing protein is a protein that in humans is encoded by the ZGPAT gene.^[5]^[6]

References

1 2 3 GRCh38: Ensembl release 89: ENSG00000197114 - Ensembl, May 2017
1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000027582 - Ensembl, May 2017
↑ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
↑ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
↑ Ordway JM, Bedell JA, Citek RW, Nunberg A, Garrido A, Kendall R, Stevens JR, Cao D, Doerge RW, Korshunova Y, Holemon H, McPherson JD, Lakey N, Leon J, Martienssen RA, Jeddeloh JA (Nov 2006). "Comprehensive DNA methylation profiling in a human cancer genome identifies novel epigenetic targets". Carcinogenesis. 27 (12): 2409–23. doi:10.1093/carcin/bgl161. PMID 16952911.
↑ "Entrez Gene: ZGPAT zinc finger, CCCH-type with G patch domain".

Olsen JV, Blagoev B, Gnad F, et al. (2006). "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks". Cell. 127 (3): 635–48. doi:10.1016/j.cell.2006.09.026. PMID 17081983. S2CID 7827573.
Kimura K, Wakamatsu A, Suzuki Y, et al. (2006). "Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes". Genome Res. 16 (1): 55–65. doi:10.1101/gr.4039406. PMC 1356129. PMID 16344560.
Rual JF, Hirozane-Kishikawa T, Hao T, et al. (2004). "Human ORFeome Version 1.1: A Platform for Reverse Proteomics". Genome Res. 14 (10B): 2128–35. doi:10.1101/gr.2973604. PMC 528929. PMID 15489335.
Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC 528928. PMID 15489334.
Ota T, Suzuki Y, Nishikawa T, et al. (2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40–5. doi:10.1038/ng1285. PMID 14702039.
Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
Deloukas P, Matthews LH, Ashurst J, et al. (2002). "The DNA sequence and comparative analysis of human chromosome 20". Nature. 414 (6866): 865–71. Bibcode:2001Natur.414..865D. doi:10.1038/414865a. PMID 11780052.
Nagase T, Nakayama M, Nakajima D, et al. (2001). "Prediction of the coding sequences of unidentified human genes. XX. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro". DNA Res. 8 (2): 85–95. doi:10.1093/dnares/8.2.85. PMID 11347906.

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[refGRCh38Ensembl-1] 1 2 3 GRCh38: Ensembl release 89: ENSG00000197114 - Ensembl, May 2017

[refGRCm38Ensembl-2] 1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000027582 - Ensembl, May 2017

[3] "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.

[4] "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.

[pmid16952911-5] Ordway JM, Bedell JA, Citek RW, Nunberg A, Garrido A, Kendall R, Stevens JR, Cao D, Doerge RW, Korshunova Y, Holemon H, McPherson JD, Lakey N, Leon J, Martienssen RA, Jeddeloh JA (Nov 2006). "Comprehensive DNA methylation profiling in a human cancer genome identifies novel epigenetic targets". Carcinogenesis. 27 (12): 2409–23. doi:10.1093/carcin/bgl161. PMID 16952911.

[entrez-6] "Entrez Gene: ZGPAT zinc finger, CCCH-type with G patch domain".

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References

Further reading